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Yuwei Bao 鲍雨薇

Welcome to my personal website!

Student Journalist
I have 30 articles published on McMurry University's War Hawks Herald school newspaper.
Outstanding Graduate
Fun fact - I was on Abilene newspaper when I graduate from McMurry University in Aug,2020.
Max
Max
Isn't Maximum the greatest?
page config

Ms.HopeJanuary 1, 2020
About 1 min
Run CNVkit to identify CNV
It is easy to find a pipeline and call for results. However, how do you confirm the results are valid? One of the good approaches is to reproduce tutorials. Goal This [^tutorial] u

Yuwei Bao7/23/2024
About 2 min
Set up passwordless ssh login to remote server
It is annoying to enter password every time when connecting to server using ssh. How can we avoid that? Question For the first time connecting to a server, you may see: The authent

Yuwei Bao3/28/2024
Less than 1 minute
Survival Analysis
Definition Survival analysis is a time to event analysis. Majorly it contains two kinds: The KM plot and Log-rank test Kaplan-Meier method is used to compute tables of the survival

Yuwei Bao3/28/2024
Less than 1 minute
16s rRNA
According to protocol paper for Kraken 2, Bracken, KrakenUniq, and KrakenTools (published Sept 28, 2022): "Metagenome analysis using the Kraken software suite" Kraken: classify mic

Yuwei Bao11/15/2023
Less than 1 minute
DiaNN
DIA-NN - a universal automated software suite for DIA proteomics data analysis. [^github] Installation [github]:https://github.com/vdemichev/DiaNN

Yuwei Bao11/15/2023
Less than 1 minute
deTEct - transposition event detector
Transposable elements (TEs) are mobile DNA sequences capable of replicating themselves within genomes independently of the host cell DNA. They are the "jumping genes" that move fro

Yuwei Bao11/15/2023
About 3 min
Run pbsv to call SVs
Due to the tool transposition_deTEct only takes structural variant detected by either pbsv or sniffles, we run pbsv. Data type It has to be long-read DNA data! Installation Usage [

Yuwei Bao11/15/2023
Less than 1 minute
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